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LOC4326898 serpin-Z1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326898, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4326898
Gene description
serpin-Z1-like
Locus tag
OSNPB_010765400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OrysaZ1; OsJ_003479
Expression
Ubiquitous expression in mature seeds (RPKM 7.8), roots before flowering (RPKM 6.6) and 6 other tissues See more
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Genomic context

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See LOC4326898 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32855159..32856806, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32250031..32251977, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326894 Neighboring gene uncharacterized LOC4326895 Neighboring gene uncharacterized LOC4326897 Neighboring gene uncharacterized LOC4326899 Neighboring gene putative calcium-binding protein CML19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serpin-Z1
Names
LOC_Os01g56010
P0403C05.26
serpin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408979.1 → NP_001395908.1  serpin-Z1

    Status: VALIDATED

    Source sequence(s)
    AK106246, AP014957, AU068729, CI140950, CI776402
    UniProtKB/Swiss-Prot
    A0A0P0V8I4, Q94DW6
    UniProtKB/TrEMBL
    A2WVE7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32855159..32856806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94DW6.1 GenPept UniProtKB/Swiss-Prot:Q94DW6

Gene LinkOut

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Molecular Biology Databases
Research Materials