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LOC4326955 uncharacterized LOC4326955 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326955, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326955
Gene description
uncharacterized LOC4326955
Locus tag
OSNPB_010927400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 4.5), flower buds (RPKM 4.5) and 6 other tissues See more
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Genomic context

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See LOC4326955 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41318808..41321509, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40674900..40677860, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354907 Neighboring gene trihelix transcription factor ASR3 Neighboring gene uncharacterized LOC4326954 Neighboring gene inactive leucine-rich repeat receptor-like protein kinase CORYNE Neighboring gene auxin response factor 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4326955
Names
DNAJ heat shock N-terminal domain-containing protein-like
OSJNBa0093F16.29
Os01g0927400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    41318808..41321509 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766982.3 → XP_015622468.1  uncharacterized protein LOC4326955

    UniProtKB/TrEMBL
    A3A151, Q8LQ03
    Conserved Domains (2) summary
    pfam11926
    Location:269 → 476
    DUF3444; Domain of unknown function (DUF3444)
    cl02542
    Location:73 → 134
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
Nucleotide Protein
Heading Accession and Version

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