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LOC4326996 S-adenosylmethionine synthase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326996, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4326996
Gene description
S-adenosylmethionine synthase 2-like
Locus tag
OSNPB_010323600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SAM2; SAMS2
Expression
Broad expression in roots before flowering (RPKM 365.3), flowers (RPKM 357.3) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (12405864..12408326, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (12363849..12366350, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pto-interacting protein 1 Neighboring gene CRS2-associated factor 2, chloroplastic Neighboring gene uncharacterized LOC136353603 Neighboring gene uncharacterized LOC9271854

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methionine adenosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in S-adenosylmethionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-adenosylmethionine synthase 2
Names
AdoMet synthase 2
LOC_Os01g22010
MAT 2
Methionine adenosyltransferase 2
OSJNBa0011P19.8
S-adenosylmethonine synthase 2
putative methionine adenosyltransferase
NP_001393223.1
NP_001393224.1
NP_001393225.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406294.1 → NP_001393223.1  S-adenosylmethionine synthase 2

    Status: VALIDATED

    Source sequence(s)
    CB642703, CB650686, CB673356, CI056734
    UniProtKB/Swiss-Prot
    P93438, Q7F660
    UniProtKB/TrEMBL
    A0A0R7VIP9, Q1H9B9, Q1H9D0

  2. NM_001406295.1 → NP_001393224.1  S-adenosylmethionine synthase 2

    Status: VALIDATED

    Source sequence(s)
    AU163661, CB643463, CB659437, CB666192, CI597543
    UniProtKB/Swiss-Prot
    P93438, Q7F660
    UniProtKB/TrEMBL
    A0A0R7VIP9, Q1H9B9, Q1H9D0

  3. NM_001406296.1 → NP_001393225.1  S-adenosylmethionine synthase 2

    Status: VALIDATED

    Source sequence(s)
    AU031901, CB642703, CB658686, CB659169
    UniProtKB/Swiss-Prot
    P93438, Q7F660
    UniProtKB/TrEMBL
    A0A0R7VIP9, Q1H9B9, Q1H9D0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    12405864..12408326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93438.1 GenPept UniProtKB/Swiss-Prot:P93438

Gene LinkOut

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Molecular Biology Databases
Research Materials