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LOC4327016 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327016, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4327016
Gene description
protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial
Locus tag
OSNPB_010754000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 8.3), flowers (RPKM 6.4) and 6 other tissues See more
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Genomic context

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See LOC4327016 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32235669..32238561)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31635528..31638432)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327015 Neighboring gene uncharacterized LOC107281091 Neighboring gene uncharacterized protein At4g28440 Neighboring gene callose synthase 12 Neighboring gene small nucleolar RNA J33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial
Names
Os01g0754000
protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32235669..32238561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766487.3 → XP_015621973.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A0P0V897, A0A8J8XAM5, B9EZQ2, Q0JJ88

  2. XM_015766490.3 → XP_015621976.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A0P0V897, A0A8J8XAM5, B9EZQ2, Q0JJ88

  3. XM_015766488.3 → XP_015621974.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0P0V897, A0A8J8XAM5, B9EZQ2, Q0JJ88

  4. XM_015766486.3 → XP_015621972.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A0P0V897, A0A8J8XAM5, B9EZQ2, Q0JJ88

  5. XM_015766489.3 → XP_015621975.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A0P0V897, A0A8J8XAM5, B9EZQ2, Q0JJ88

RNA

  1. XR_003239181.2 RNA Sequence

  2. XR_001542607.3 RNA Sequence

  3. XR_010734977.1 RNA Sequence

  4. XR_001542609.3 RNA Sequence

  5. XR_001542610.3 RNA Sequence

  6. XR_001542608.3 RNA Sequence

  7. XR_003239163.2 RNA Sequence

Nucleotide Protein
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