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LOC4327118 embryo-specific protein ATS3A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327118, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4327118
Gene description
embryo-specific protein ATS3A
Locus tag
OSNPB_010172800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4327118 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3744735..3745570)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3735835..3736805)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phospholipase D alpha 1-like Neighboring gene peroxidase 25 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene polygalacturonase QRT2 Neighboring gene DCC family protein At1g52590, chloroplastic Neighboring gene uncharacterized protein At2g34160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
embryo-specific protein ATS3A
Names
OSJNBa0089K24.2
Os01g0172800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    3744735..3745570
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791174.3 → XP_015646660.1  embryo-specific protein ATS3A

    UniProtKB/TrEMBL
    A0A0N7KCF1, A2WL80, A2ZPS9, Q94E65
    Conserved Domains (1) summary
    pfam06232
    Location:48 → 181
    ATS3; Embryo-specific protein 3, (ATS3)
Nucleotide Protein
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