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LOC4327163 vacuolar protein sorting-associated protein 25 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327163, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4327163
Gene description
vacuolar protein sorting-associated protein 25
Locus tag
OSNPB_010658500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 32.3), roots after flowering (RPKM 29.5) and 6 other tissues See more
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Genomic context

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See LOC4327163 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27367625..27371100, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26785178..26788660, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327161 Neighboring gene ubiquitin-conjugating enzyme E2 5A-like Neighboring gene sphinganine C4-monooxygenase 2 Neighboring gene putative glucose-6-phosphate 1-epimerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 25
Names
Os01g0658500
P0684E06.3-1
P0684E06.3-2
P0694A04.40-1
P0694A04.40-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406304.1 → NP_001393233.1  vacuolar protein sorting-associated protein 25

    Status: VALIDATED

    Source sequence(s)
    AK058491, CF303626, CI339647
    UniProtKB/TrEMBL
    A0A0P0V6A0, B8A6V9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    27367625..27371100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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