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LOC4327253 calmodulin-binding transcription activator 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327253, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4327253
Gene description
calmodulin-binding transcription activator 4
Locus tag
OSNPB_010923600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 21.0), leaves after flowering (RPKM 20.9) and 6 other tissues See more
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Genomic context

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See LOC4327253 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41039967..41045902)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40397301..40403252)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene CBS domain-containing protein CBSCBSPB1 Neighboring gene uncharacterized LOC9267008 Neighboring gene probable histidine kinase 3 Neighboring gene uncharacterized LOC4327255

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator 4
Names
B1455F06.32-1
B1455F06.32-2
Os01g0923600
P0592G05.16-1
P0592G05.16-2
ethylene-induced calmodulin-binding protein 4-like
putative ethylene-induced calmodulin-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424578.1 → NP_001411507.1  calmodulin-binding transcription activator 4 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK068932, AK122110
    UniProtKB/TrEMBL
    A0A0P0VCE4, A0A8J8XE50, Q5JJP3, Q5JJQ1

  2. NM_001424579.1 → NP_001411508.1  calmodulin-binding transcription activator 4 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK068932, AK122110, CI000031

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    41039967..41045902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010738979.1 RNA Sequence

  2. XR_010738978.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials