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LOC4327303 transcription factor RAX2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327303, updated on 16-Jul-2024

Summary

Gene symbol
LOC4327303
Gene description
transcription factor RAX2
Locus tag
OSNPB_010191900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0671B11.5
Expression
Broad expression in roots before flowering (RPKM 25.6), flower buds (RPKM 10.0) and 5 other tissues See more
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Genomic context

See LOC4327303 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4928769..4930092, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4917849..4919439, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent 6-phosphofructokinase 6 Neighboring gene serine/threonine-protein kinase Aurora-2 Neighboring gene zinc finger CCCH domain-containing protein 2-like Neighboring gene transcription factor MYBS3-like

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
transcription factor RAX2
Names
Os01g0191900
P0710E05.40
putative typical P-type R2R3 Myb protein
typical P-type R2R3 Myb protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    4928769..4930092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772933.3XP_015628419.1  transcription factor RAX2

    UniProtKB/TrEMBL
    A2WLL5, A2ZQ71, Q0JPY9, Q7F7N6, Q9LG70
    Conserved Domains (2) summary
    smart00717
    Location:1464
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:1462
    Myb_DNA-binding; Myb-like DNA-binding domain