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LOC4327333 cytokinin dehydrogenase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327333, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4327333
Gene description
cytokinin dehydrogenase 2-like
Locus tag
OSNPB_010197700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CKX2; Gn1a; OsCKX2; OsJ_00744; B1046G12.8
Expression
Biased expression in flower buds (RPKM 8.5), roots after flowering (RPKM 1.2) and 2 other tissues See more
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Genomic context

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See LOC4327333 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5279189..5284764, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5270294..5275673, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At1g17630 Neighboring gene uncharacterized LOC4327332 Neighboring gene probable RNA-dependent RNA polymerase 3 Neighboring gene probable RNA-dependent RNA polymerase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Cytokinin oxidase regulates rice grain production. Ashikari M, et al. Science, 2005 Jul 29. PMID 15976269
  2. Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes. Wang S, et al. Theor Appl Genet, 2018 Jun. PMID 29546444
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokinin dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokinin dehydrogenase 2
Names
Cytokinin oxidase 2
LOC_Os01g10110
P0419B01.20
QTL grain number 1a
cytokinin oxidase/dehydrogenase
putative cytokinin oxidase
NP_001393243.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406314.1 → NP_001393243.1  cytokinin dehydrogenase 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AK243684, CI543909, CI555842, CI760329
    UniProtKB/Swiss-Prot
    A0A0P0UZJ1, B9ETN0, Q4ADV8, Q94IV9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    5279189..5284764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4ADV8.1 GenPept UniProtKB/Swiss-Prot:Q4ADV8

Gene LinkOut

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Molecular Biology Databases
Research Materials