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LOC4327446 uncharacterized serine-rich protein C215.13 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327446, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4327446
Gene description
uncharacterized serine-rich protein C215.13
Locus tag
OSNPB_010819000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1529_G03.4-1
Expression
Ubiquitous expression in roots after flowering (RPKM 33.6), leaves after flowering (RPKM 25.1) and 6 other tissues See more
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Genomic context

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See LOC4327446 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35495532..35499805)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34888300..34892763)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g06840 Neighboring gene uncharacterized LOC4327444 Neighboring gene uncharacterized LOC136356048 Neighboring gene probable inactive receptor kinase At5g58300 Neighboring gene synaptotagmin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cortical microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cortical microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized serine-rich protein C215.13
Names
Os01g0819000
P0454H12.39-1
gastric mucin-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    35495532..35499805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766721.3 → XP_015622207.1  uncharacterized serine-rich protein C215.13

    UniProtKB/TrEMBL
    B8ABB2, B9ETW8, Q0JI78, Q5QLZ3, Q5QML8
    Conserved Domains (2) summary
    PHA03247
    Location:108 → 396
    PHA03247; large tegument protein UL36; Provisional
    pfam15402
    Location:48 → 196
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  2. XM_015766719.3 → XP_015622205.1  uncharacterized serine-rich protein C215.13

    UniProtKB/TrEMBL
    B8ABB2, B9ETW8, Q0JI78, Q5QLZ3, Q5QML8
    Conserved Domains (2) summary
    PHA03247
    Location:108 → 396
    PHA03247; large tegument protein UL36; Provisional
    pfam15402
    Location:48 → 196
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
Nucleotide Protein
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