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LOC4327518 WRKY transcription factor WRKY24-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327518, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4327518
Gene description
WRKY transcription factor WRKY24-like
Locus tag
OSNPB_010826400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
WRKY8; WRKY24; OsWRKY24; OsJ_03928
Expression
Biased expression in roots before flowering (RPKM 291.1), leaves after flowering (RPKM 54.2) and 2 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35972864..35975529)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35347978..35350643)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937451 Neighboring gene uncharacterized LOC4327516 Neighboring gene copper transport protein ATX1 Neighboring gene uncharacterized LOC136354976 Neighboring gene uncharacterized LOC136355502

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice. Amir Hossain M, et al. Plant Mol Biol, 2010 Mar. PMID 20039193
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. isolated and characterized ABF1 (ABA responsive element binding factor 1) gene that encodes a bZIP transcription factor
    Title: The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WRKY transcription factor WRKY24
Names
OSNPB_010826400
P0439E11.24
WRKY transcription factor 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406347.1 → NP_001393276.1  WRKY transcription factor WRKY24

    Status: VALIDATED

    Source sequence(s)
    AK107199, CI245735, CI580125
    UniProtKB/Swiss-Prot
    Q6B6R4, Q6IEQ7, Q7XAA7, Q94D89

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    35972864..35975529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IEQ7.1 GenPept UniProtKB/Swiss-Prot:Q6IEQ7

Gene LinkOut

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Molecular Biology Databases
Research Materials