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LOC4327722 pentatricopeptide repeat-containing protein At5g55740, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327722, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4327722
Gene description
pentatricopeptide repeat-containing protein At5g55740, chloroplastic
Locus tag
OSNPB_010607800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4327722 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24544759..24547371)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23969728..23972316)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcriptional corepressor LEUNIG Neighboring gene transcriptional corepressor LEUNIG Neighboring gene probable inactive receptor kinase At2g26730 Neighboring gene uncharacterized LOC136354924

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At5g55740, chloroplastic
Names
Os01g0607800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    24544759..24547371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774129.3 → XP_015629615.1  pentatricopeptide repeat-containing protein At5g55740, chloroplastic

    UniProtKB/TrEMBL
    A2WSF8
    Conserved Domains (4) summary
    sd00004
    Location:448 → 475
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:245 → 275
    PPR; PPR repeat
    pfam12854
    Location:309 → 341
    PPR_1; PPR repeat
    pfam13041
    Location:479 → 528
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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