U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4327777 protein DEFECTIVE IN MERISTEM SILENCING 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327777, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4327777
Gene description
protein DEFECTIVE IN MERISTEM SILENCING 3
Locus tag
OSNPB_010235200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 6.3), roots after flowering (RPKM 5.8) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4327777 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7471450..7476621, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7460362..7465557, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene uncharacterized LOC4327776 Neighboring gene uncharacterized LOC4327778 Neighboring gene WPP domain-interacting tail-anchored protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
protein DEFECTIVE IN MERISTEM SILENCING 3
Names
Os01g0235200
P0702F03.31-1
P0708G02.4-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    7471450..7476621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066312714.1 → XP_066168811.1  protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X2

  2. XM_066312710.1 → XP_066168807.1  protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1

  3. XM_015765619.3 → XP_015621105.1  protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X2

    UniProtKB/TrEMBL
    B9EUK0
    Conserved Domains (1) summary
    COG1196
    Location:2 → 350
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_015765611.3 → XP_015621097.1  protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1

    UniProtKB/TrEMBL
    B9EUK0, Q0JP94, Q5NAX4, Q5NB95
    Conserved Domains (1) summary
    cl11483
    Location:339 → 393
    PriC; Primosomal replication protein priC
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials