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LOC4327810 GATA transcription factor 16 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327810, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4327810
Gene description
GATA transcription factor 16
Locus tag
OSNPB_010976800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 14.6), leaves after flowering (RPKM 11.9) and 6 other tissues See more
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Genomic context

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See LOC4327810 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43825385..43826663, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (43171896..43173202, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like Neighboring gene probable protein phosphatase 2C 38 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g67720 Neighboring gene uncharacterized LOC136355537

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATA transcription factor 16
Names
Os01g0976800
P0020E09.12
zinc finger protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    43825385..43826663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785691.3 → XP_015641177.1  GATA transcription factor 16

    UniProtKB/TrEMBL
    A0A0P0VDM5, A0A5S6RBR4, Q0JFJ4, Q5JNB8
    Conserved Domains (1) summary
    smart00401
    Location:19 → 60
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
Nucleotide Protein
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