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LOC4327866 carboxyl-terminal-processing peptidase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327866, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4327866
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Locus tag
OSNPB_010664000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0003E08.5
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Genomic context

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See LOC4327866 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27698121..27703860)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27115566..27121300)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial Neighboring gene GBF-interacting protein 1-like Neighboring gene uncharacterized LOC4327867 Neighboring gene probable receptor-like protein kinase At2g42960

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic
Names
Os01g0664000
carboxy-terminal proteinase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    27698121..27703860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766971.3 → XP_015622457.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A0P0V6A3, A2WTH8, Q0JKM5
    Conserved Domains (1) summary
    PLN00049
    Location:88 → 444
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_066306903.1 → XP_066163000.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials