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LOC4328199 nuclear transport factor 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328199, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328199
Gene description
nuclear transport factor 2
Locus tag
OSNPB_020131700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1007_D04.22
Expression
Ubiquitous expression in flower buds (RPKM 66.3), roots before flowering (RPKM 58.5) and 6 other tissues See more
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Genomic context

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See LOC4328199 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1659310..1662717, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1652074..1655455, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable ATP synthase 24 kDa subunit, mitochondrial Neighboring gene uncharacterized LOC4328197 Neighboring gene metal transporter NRAT1-like Neighboring gene putative F-box protein At3g10240 Neighboring gene pentatricopeptide repeat-containing protein At2g17140

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transport factor 2
Names
Os02g0131700
putative Ras-GTPase activating protein SH3 domain-binding protein 2
ras GTPase-activating protein-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    1659310..1662717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307377.1 → XP_066163474.1  nuclear transport factor 2 isoform X4

  2. XM_015769930.3 → XP_015625416.1  nuclear transport factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A0P0VEB3, B9F2A3
    Conserved Domains (3) summary
    smart00360
    Location:310 → 381
    RRM; RNA recognition motif
    COG0724
    Location:282 → 388
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd00780
    Location:11 → 130
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...

  3. XM_066307376.1 → XP_066163473.1  nuclear transport factor 2 isoform X3

  4. XM_015769928.3 → XP_015625414.1  nuclear transport factor 2 isoform X1

    UniProtKB/TrEMBL
    B9F2A3
    Conserved Domains (2) summary
    smart00360
    Location:312 → 383
    RRM; RNA recognition motif
    cd00780
    Location:11 → 130
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
Nucleotide Protein
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