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LOC4328252 glucan endo-1,3-beta-glucosidase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328252, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328252
Gene description
glucan endo-1,3-beta-glucosidase 6
Locus tag
OSNPB_020139300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1679_B08.3
Expression
Broad expression in flower buds (RPKM 10.8), flowers (RPKM 9.0) and 6 other tissues See more
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Genomic context

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See LOC4328252 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2104627..2108436)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2096208..2100823)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein arginine N-methyltransferase 5-like Neighboring gene uncharacterized LOC136355332 Neighboring gene uncharacterized LOC136355331 Neighboring gene squamosa promoter-binding-like protein 3 Neighboring gene cycloartenol synthase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 6
Names
OSJNBa0026E05.37
Os02g0139300
putative beta-1,3-glucanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    2104627..2108436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771779.3 → XP_015627265.1  glucan endo-1,3-beta-glucosidase 6

    UniProtKB/TrEMBL
    A2X0Q5, Q0E430, Q6YXZ6, Q6Z2X7
    Conserved Domains (2) summary
    smart00768
    Location:368 → 452
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:32 → 349
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

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