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LOC4328445 uncharacterized LOC4328445 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328445, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328445
Gene description
uncharacterized LOC4328445
Locus tag
OSNPB_020170900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1116_A06.34-1
Expression
Broad expression in flowers (RPKM 12.2), flower buds (RPKM 8.0) and 6 other tissues See more
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Genomic context

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See LOC4328445 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3865188..3872924, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3855933..3863872, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit C-4-like Neighboring gene uncharacterized LOC9267856 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic Neighboring gene uncharacterized LOC112937803

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4328445
Names
Os02g0170900
P0030G02.24-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3865188..3872924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767957.3 → XP_015623443.1  uncharacterized protein LOC4328445

    UniProtKB/TrEMBL
    B9F3A3, Q0E3J4, Q6H704
    Conserved Domains (2) summary
    cd00254
    Location:294 → 387
    LT-like; lytic transglycosylase(LT)-like domain
    cl00222
    Location:71 → 173
    Lyz-like; lysozyme-like domains

  2. XM_015767958.3 → XP_015623444.1  uncharacterized protein LOC4328445

    UniProtKB/TrEMBL
    B9F3A3, Q0E3J4, Q6H704
    Conserved Domains (2) summary
    cd00254
    Location:294 → 387
    LT-like; lytic transglycosylase(LT)-like domain
    cl00222
    Location:71 → 173
    Lyz-like; lysozyme-like domains
Nucleotide Protein
Heading Accession and Version

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