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LOC4328526 pyrophosphate-energized vacuolar membrane proton pump [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328526, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328526
Gene description
pyrophosphate-energized vacuolar membrane proton pump
Locus tag
OSNPB_020184200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OVP5; OJ1572_F02.11
Expression
Ubiquitous expression in leaves before flowering (RPKM 135.4), flower buds (RPKM 121.4) and 6 other tissues See more
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Genomic context

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See LOC4328526 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4703422..4709120, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4693855..4699454, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein S-acyltransferase 24 Neighboring gene uncharacterized LOC4328525 Neighboring gene probable sucrose-phosphate synthase 2 Neighboring gene uncharacterized LOC4328528

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diphosphate hydrolysis-driven proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inorganic diphosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyrophosphate-energized vacuolar membrane proton pump
Names
Os02g0184200
putative inorganic diphosphatase
vacuolar proton pyrophosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    4703422..4709120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770127.3 → XP_015625613.1  pyrophosphate-energized vacuolar membrane proton pump

    UniProtKB/TrEMBL
    B9F3Q2, Q6H883, Q75U52
    Conserved Domains (1) summary
    PLN02255
    Location:4 → 770
    PLN02255; H(+) -translocating inorganic pyrophosphatase
Nucleotide Protein
Heading Accession and Version

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