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LOC4328562 RPM1-interacting protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328562, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4328562
Gene description
RPM1-interacting protein 4
Locus tag
OSNPB_020189400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1145_F01.28
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Genomic context

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See LOC4328562 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4959080..4962286, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4949518..4953199, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At2g04570 Neighboring gene GDSL esterase/lipase At4g26790 Neighboring gene uncharacterized LOC136355177 Neighboring gene ethylene-responsive transcription factor 3 Neighboring gene uncharacterized LOC107277631 Neighboring gene putative multidrug resistance protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RPM1-interacting protein 4
Names
OSJNBb0031B09.7
Os02g0189400
homeobox protein B-H1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    4959080..4962286 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768593.3 → XP_015624079.1  RPM1-interacting protein 4

    UniProtKB/TrEMBL
    B8AJ85, Q0E382, Q6YUV0
    Conserved Domains (1) summary
    pfam05627
    Location:4 → 32
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr
Nucleotide Protein
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