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LOC4328638 putative F-box protein At1g32420 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328638, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4328638
Gene description
putative F-box protein At1g32420
Locus tag
OSNPB_020199500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0419A09.1
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Genomic context

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See LOC4328638 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5583871..5587134)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5571990..5576494)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene uncharacterized LOC4328639 Neighboring gene C2 and GRAM domain-containing protein At1g03370 Neighboring gene 26S proteasome regulatory subunit S10B homolog B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative F-box protein At1g32420
Names
F-box and FBA domain-containing protein
Os02g0199500
P0026H03.30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    5583871..5587134
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771847.3 → XP_015627333.1  putative F-box protein At1g32420

    UniProtKB/TrEMBL
    A3A481, Q6Z7A7
    Conserved Domains (2) summary
    cl23987
    Location:111 → 291
    FBA_1; F-box associated
    pfam00646
    Location:21 → 53
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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