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LOC4328727 uncharacterized LOC4328727 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328727, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4328727
Gene description
uncharacterized LOC4328727
Locus tag
OSNPB_020216300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 218.7), leaves before flowering (RPKM 172.2) and 5 other tissues See more
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Genomic context

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See LOC4328727 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (6532111..6537033, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (6508867..6513842, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278551 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene uncharacterized LOC4328726 Neighboring gene uncharacterized LOC136355133 Neighboring gene uncharacterized LOC4328729

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4328727
Names
B1307A11.18-1
B1307A11.18-2
Os02g0216300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    6532111..6537033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769190.3 → XP_015624676.1  uncharacterized protein LOC4328727 isoform X1

    UniProtKB/TrEMBL
    B7E6C5, B9F4A3, Q6YV06

  2. XM_015769193.2 → XP_015624679.1  uncharacterized protein LOC4328727 isoform X4

    UniProtKB/TrEMBL
    B7E4L2, B7E5A6

  3. XM_026023314.2 → XP_025879099.1  uncharacterized protein LOC4328727 isoform X2

    UniProtKB/TrEMBL
    B7E5A6

  4. XM_015769191.2 → XP_015624677.1  uncharacterized protein LOC4328727 isoform X3

    UniProtKB/TrEMBL
    B7E5A6, B7EC41, Q0E2T0

RNA

  1. XR_001543068.3 RNA Sequence

  2. XR_003240828.2 RNA Sequence

  3. XR_010739252.1 RNA Sequence

  4. XR_010739251.1 RNA Sequence

  5. XR_003240829.2 RNA Sequence

  6. XR_003240827.2 RNA Sequence

  7. XR_010739250.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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