U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4328786 pentatricopeptide repeat-containing protein At1g51965, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328786, updated on 17-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4328786
Gene description
pentatricopeptide repeat-containing protein At1g51965, mitochondrial
Locus tag
OSNPB_020226900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0620H05.3; P0620H05.4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4328786 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7140339..7143841)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7115770..7119635)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene homeobox protein ATH1 Neighboring gene abscisic acid receptor PYL9-like Neighboring gene nudix hydrolase 8-like Neighboring gene endoribonuclease YBEY, chloroplastic Neighboring gene protein OXIDATIVE STRESS 3 Neighboring gene early nodulin-93

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pentatricopeptide repeat-containing protein At1g51965, mitochondrial
Names
P0495C02.30
P0495C02.31
mutT domain protein-like
putative pentatricopeptide (PPR) repeat-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    7140339..7143841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026023327.2 → XP_025879112.1  pentatricopeptide repeat-containing protein At1g51965, mitochondrial

    UniProtKB/TrEMBL
    Q6H5Z3, Q6H6I9
    Conserved Domains (2) summary
    PLN03218
    Location:184 → 614
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:465 → 492
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials