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LOC4328798 monosaccharide-sensing protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328798, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4328798
Gene description
monosaccharide-sensing protein 2
Locus tag
OSNPB_020229400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 88.8), leaves before flowering (RPKM 85.4) and 6 other tissues See more
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Genomic context

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See LOC4328798 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7297774..7303010)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7273017..7278177)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA7-like Neighboring gene small ribosomal subunit protein eS24z Neighboring gene kinesin-like protein KIN-14D Neighboring gene uncharacterized LOC4328801

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa). Cho JI, et al. New Phytol, 2010 May. PMID 20202129
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
monosaccharide-sensing protein 2
Names
OSJNBb0035N08.17
Os02g0229400
putative hexose transporter
tonoplast monosaccharide transporter 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409872.1 → NP_001396801.1  monosaccharide-sensing protein 2

    Status: VALIDATED

    Source sequence(s)
    AK120560, CI123490, GU066766
    UniProtKB/TrEMBL
    A3A4S7, Q0E2L5, Q6H536

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    7297774..7303010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770476.3 → XP_015625962.1  monosaccharide-sensing protein 2 isoform X1

    UniProtKB/TrEMBL
    A3A4S7, Q0E2L5, Q6H536
    Conserved Domains (2) summary
    cd17315
    Location:10 → 193
    MFS_GLUT_like; Glucose transporters (GLUTs) and other similar sugar transporters of the Major Facilitator Superfamily
    cl28910
    Location:524 → 721
    MFS; Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version

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