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LOC4328851 glutelin type-B 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328851, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328851
Gene description
glutelin type-B 5-like
Locus tag
OSNPB_020242600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GluB; GluB-5
Expression
Restricted expression toward milk grains (RPKM 1786.0) See more
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Genomic context

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See LOC4328851 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8082865..8084880)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8057623..8059642)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable BOI-related E3 ubiquitin-protein ligase 3 Neighboring gene hydroquinone glucosyltransferase Neighboring gene UDP-glycosyltransferase 72B1 Neighboring gene UDP-glycosyltransferase 72B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization of a novel glutelin subunit OsGluBX by the experimental approach and molecular dynamics simulations. He Y, et al. Appl Biochem Biotechnol, 2013 Mar. PMID 23319183

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nutrient reservoir activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutelin type-B 5-like
Names
GluB-5 long
Os02g0242600
P0503B05.14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    8082865..8084880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768183.3 → XP_015623669.1  glutelin type-B 5-like

    UniProtKB/TrEMBL
    A0A0N7KF02, A0A8J8YE37, A3A4Z7, C0L8H1, Q6ESW6
    Conserved Domains (1) summary
    PLN00212
    Location:2 → 492
    PLN00212; glutelin; Provisional
Nucleotide Protein
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