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LOC4328917 protein REDUCED CHLOROPLAST COVERAGE 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328917, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328917
Gene description
protein REDUCED CHLOROPLAST COVERAGE 2
Locus tag
OSNPB_020255700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 65.1), roots after flowering (RPKM 28.1) and 3 other tissues See more
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Genomic context

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See LOC4328917 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8835743..8846602, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8810101..8820955, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene abscisic acid receptor PYL3-like Neighboring gene abscisic acid receptor PYL3-like Neighboring gene uncharacterized LOC136355476 Neighboring gene probable polygalacturonase Neighboring gene uncharacterized LOC4328919

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in organelle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein REDUCED CHLOROPLAST COVERAGE 2
Names
OSJNBa0052K15.22-1
Os02g0255700
P0613F08.4-1
protein TSS
tetratricopeptide repeat (TPR)-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    8835743..8846602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770623.3 → XP_015626109.1  protein REDUCED CHLOROPLAST COVERAGE 2

    UniProtKB/TrEMBL
    A3A568
    Conserved Domains (6) summary
    cd15466
    Location:711 → 853
    CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
    sd00006
    Location:925 → 951
    TPR; TPR repeat [structural motif]
    pfam13236
    Location:337 → 394
    CLU; Clustered mitochondria
    pfam13374
    Location:922 → 963
    TPR_10; Tetratricopeptide repeat
    pfam13424
    Location:919 → 992
    TPR_12; Tetratricopeptide repeat
    pfam15044
    Location:47 → 118
    CLU_N; Mitochondrial function, CLU-N-term
Nucleotide Protein
Heading Accession and Version

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