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LOC4329014 tobamovirus multiplication protein 2B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329014, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329014
Gene description
tobamovirus multiplication protein 2B
Locus tag
OSNPB_020279600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 33.1), flower buds (RPKM 32.6) and 6 other tissues See more
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Genomic context

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See LOC4329014 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10359773..10362899)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10330692..10333787)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ent-copalyl diphosphate synthase 1, chloroplastic-like Neighboring gene uncharacterized LOC136355111 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA U61 Neighboring gene small nucleolar RNA snoR14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
tobamovirus multiplication protein 2B
Names
Os02g0279600
P0444A09.25
putative tobamovirus multiplication protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    10359773..10362899
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768202.3 → XP_015623688.1  tobamovirus multiplication protein 2B

    UniProtKB/TrEMBL
    A0A0P0VHP1, A0A5S6RAE4, A2X3G0, Q0E223, Q6ET30
Nucleotide Protein
Heading Accession and Version

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