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LOC4329275 cocosin 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329275, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329275
Gene description
cocosin 1
Locus tag
OSNPB_020453600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
glutelin
Expression
Biased expression in milk grains (RPKM 10085.0) and mature seeds (RPKM 2239.6) See more
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Genomic context

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See LOC4329275 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (15449631..15451611, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (14991685..14993714, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 6 Neighboring gene uncharacterized LOC112937880 Neighboring gene uncharacterized LOC4329276 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nutrient reservoir activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cocosin 1
Names
Os02g0453600
P0533E11.34-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    15449631..15451611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771965.3 → XP_015627451.1  cocosin 1

    UniProtKB/TrEMBL
    A1YQH0, B9EZT3, Q6K7K6, Q9ZWJ8
    Conserved Domains (1) summary
    cl40423
    Location:1 → 510
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

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