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LOC4329310 prefoldin subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329310, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329310
Gene description
prefoldin subunit 1
Locus tag
OSNPB_020462900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4329310 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (15982492..15986164)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (15524124..15527908)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271432 Neighboring gene WRKY transcription factor WRKY51-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC107279934

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of prefoldin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prefoldin subunit 1
Names
OSJNBa0035A24.10
Os02g0462900
prefoldin-related KE2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    15982492..15986164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767739.3 → XP_015623225.1  prefoldin subunit 1

    UniProtKB/TrEMBL
    A0A8J8YS75, B7FA44, B8AHH6, B9EZV2
    Conserved Domains (1) summary
    pfam01920
    Location:14 → 115
    Prefoldin_2; Prefoldin subunit
Nucleotide Protein
Heading Accession and Version

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Research Materials