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LOC4329350 aspartic proteinase 39 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329350, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329350
Gene description
aspartic proteinase 39
Locus tag
OSNPB_020473200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 26.6), mature seeds (RPKM 14.6) and 6 other tissues See more
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Genomic context

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See LOC4329350 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16573999..16579481, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16114932..16120435, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 44 Neighboring gene riboflavin biosynthesis protein PYRR, chloroplastic Neighboring gene uncharacterized LOC107280087 Neighboring gene F-box only protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartic proteinase 39
Names
Os02g0473200
P0046H03.30-1
P0046H03.30-2
P0046H03.30-3
P0487H05.16-1
P0487H05.16-2
P0487H05.16-3
nucellin-like aspartic protease-like
putative aspartic proteinase nepenthesin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    16573999..16579481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026023501.2 → XP_025879286.1  aspartic proteinase 39 isoform X2

    UniProtKB/TrEMBL
    B8AHK7
    Conserved Domains (1) summary
    cd05476
    Location:90 → 446
    pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

  2. XM_015771391.3 → XP_015626877.1  aspartic proteinase 39 isoform X1

    UniProtKB/TrEMBL
    B8AHK7, Q6K6I2, Q6K6M4
    Conserved Domains (1) summary
    cd05476
    Location:90 → 447
    pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
Nucleotide Protein
Heading Accession and Version

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