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LOC4329438 ubiquitin-like modifier-activating enzyme 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329438, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4329438
Gene description
ubiquitin-like modifier-activating enzyme 5
Locus tag
OSNPB_020506500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_06853
Expression
Ubiquitous expression in milk grains (RPKM 15.8), flower buds (RPKM 10.4) and 6 other tissues See more
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Genomic context

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See LOC4329438 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (18500150..18510951)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (18039085..18049862)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g41620 Neighboring gene F-box protein At5g50450 Neighboring gene uncharacterized LOC136351200 Neighboring gene uncharacterized LOC4329439 Neighboring gene small nucleolar RNA Z247

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UFM1 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ufmylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like modifier-activating enzyme 5
Names
LOC_Os02g30310
P0047E05.15
P0047E05.15-1
P0047E05.15-2
P0047E05.15-3
Ubiquitin-activating enzyme 5
putative Ubiquitin activating enzyme
ubiquitin activating enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416621.1 → NP_001403550.1  ubiquitin-like modifier-activating enzyme 5

    Status: VALIDATED

    Source sequence(s)
    AP014958, CB658125, CB661577, CI543511, CI697279
    UniProtKB/Swiss-Prot
    B9F062, Q6K6K5, Q6K6K6, Q6K6K7
    UniProtKB/TrEMBL
    G3CKJ0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    18500150..18510951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6K6K7.1 GenPept UniProtKB/Swiss-Prot:Q6K6K7

Gene LinkOut

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Molecular Biology Databases
Research Materials