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LOC4329531 uncharacterized LOC4329531 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329531, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329531
Gene description
uncharacterized LOC4329531
Locus tag
OSNPB_020528100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 6.5), roots before flowering (RPKM 3.4) and 3 other tissues See more
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Genomic context

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See LOC4329531 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19830508..19832798, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19352611..19355038, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene RING-H2 finger protein ATL80 Neighboring gene 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic Neighboring gene replication protein A 70 kDa DNA-binding subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4329531
Names
Os02g0528100
P0458B05.34-1
P0475F05.14-1
coiled-coil domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    19830508..19832798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769249.3 → XP_015624735.1  uncharacterized protein LOC4329531

    UniProtKB/TrEMBL
    A3A7J5, B7EU28, Q6H6P9
    Conserved Domains (1) summary
    pfam04949
    Location:38 → 172
    Transcrip_act; Transcriptional activator
Nucleotide Protein
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