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LOC4329532 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329532, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329532
Gene description
1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic
Locus tag
OSNPB_020528200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BE3; RBE3; SBE3
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Genomic context

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See LOC4329532 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19833707..19845330, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19355808..19367580, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL80 Neighboring gene uncharacterized LOC4329531 Neighboring gene replication protein A 70 kDa DNA-binding subunit B Neighboring gene uncharacterized LOC136355337 Neighboring gene major pollen allergen Ole e 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice. Nagamatsu S, et al. Plant Mol Biol, 2022 Mar. PMID 35083581
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice.
    Title: Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice.
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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in starch metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic
Names
Os02g0528200
P0475F05.16
branching enzyme-3
rice starch branching enzyme
starch branching enzyme 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    19833707..19845330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772017.3 → XP_015627503.1  1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A222NP86, B3VDJ4, D0TZK1, I6VRB8, Q0E0R5, Q40663, Q6H6P8
    Conserved Domains (2) summary
    PLN02447
    Location:69 → 825
    PLN02447; 1,4-alpha-glucan-branching enzyme
    TIGR04267
    Location:2 → 99
    mod_HExxH; HEXXH motif domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials