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LOC4329775 14-3-3-like protein GF14-E [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329775, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4329775
Gene description
14-3-3-like protein GF14-E
Locus tag
OSNPB_020580300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GID2; GF14E; OsJ_07268; OJ1115_A05.5-1
Expression
Ubiquitous expression in roots before flowering (RPKM 52.0), flowers (RPKM 50.7) and 6 other tissues See more
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Genomic context

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See LOC4329775 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22814840..22819234)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22333215..22337612)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cell number regulator 2 Neighboring gene uncharacterized LOC4329774 Neighboring gene F-box protein GID2 Neighboring gene 14-3-3-like protein GF14-E Neighboring gene uncharacterized LOC4329776 Neighboring gene prohibitin-3, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice. Chen Y, et al. Biochem Biophys Res Commun, 2017 Dec 2. PMID 28988107
  2. Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Sasaki A, et al. Science, 2003 Mar 21. PMID 12649483
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
14-3-3-like protein GF14-E
Names
B1267B06.30-1
F-box protein GID2
G-box factor 14-3-3 homolog E
Gibberellin-insensitive dwarf protein 2
LOC_Os02g36974
Protein GIBBERELLIN INSENSITIVE DWARF2
putative GF14-b protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401888.1 → NP_001388817.1  14-3-3-like protein GF14-E

    Status: VALIDATED

    Source sequence(s)
    AK104907, CI613211
    UniProtKB/Swiss-Prot
    Q0E040, Q6EUP4, Q9M3X9
    UniProtKB/TrEMBL
    A2X6G8

  2. NM_001401890.1 → NP_001388819.1  14-3-3-like protein GF14-E

    Status: VALIDATED

    Source sequence(s)
    AK066506, AK104907
    UniProtKB/Swiss-Prot
    Q0E040, Q6EUP4, Q9M3X9
    UniProtKB/TrEMBL
    A2X6G8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    22814840..22819234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6EUP4.1 GenPept UniProtKB/Swiss-Prot:Q6EUP4

Gene LinkOut

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Molecular Biology Databases
Research Materials