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LOC4329793 pentatricopeptide repeat-containing protein At5g65560 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329793, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4329793
Gene description
pentatricopeptide repeat-containing protein At5g65560
Locus tag
OSNPB_020582300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4329793 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22934205..22939292, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22453459..22457748, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269114 Neighboring gene uncharacterized LOC4329792 Neighboring gene uncharacterized LOC4329794 Neighboring gene heavy metal-associated isoprenylated plant protein 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At5g65560
Names
OSJNBa0016D04.14
Os02g0582300
putative pentatricopeptide (PPR) repeat-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    22934205..22939292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307502.1 → XP_066163599.1  pentatricopeptide repeat-containing protein At5g65560

    UniProtKB/TrEMBL
    Q0E022, Q6EPV3
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials