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LOC4329805 heavy metal-associated isoprenylated plant protein 12 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329805, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329805
Gene description
heavy metal-associated isoprenylated plant protein 12
Locus tag
OSNPB_020585100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots before flowering (RPKM 292.5) and flowers (RPKM 10.2) See more
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Genomic context

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See LOC4329805 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23040740..23041762, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22558798..22559754, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 47 Neighboring gene uncharacterized LOC4329804 Neighboring gene heavy metal-associated isoprenylated plant protein 16 Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heavy metal-associated isoprenylated plant protein 12
Names
OSJNBb0056I22.14
Os02g0585100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23040740..23041762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768755.3 → XP_015624241.1  heavy metal-associated isoprenylated plant protein 12

    UniProtKB/TrEMBL
    Q0E010
Nucleotide Protein
Heading Accession and Version

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