U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4329853 uncharacterized LOC4329853 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329853, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4329853
Gene description
uncharacterized LOC4329853
Locus tag
OSNPB_020594900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1126_D09.18
Expression
Broad expression in roots before flowering (RPKM 118.2), roots after flowering (RPKM 42.7) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4329853 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23552248..23555110, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23069732..23072541, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At1g67900 Neighboring gene NAC domain-containing protein 73 Neighboring gene uncharacterized LOC4329854 Neighboring gene uncharacterized LOC4329855 Neighboring gene uncharacterized LOC4329856

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC4329853
Names
Os02g0594900
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
glycosyl transferase-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23552248..23555110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767193.3 → XP_015622679.1  uncharacterized protein LOC4329853 isoform X1

    UniProtKB/TrEMBL
    A2X6Q3, Q0DZW5, Q6ZI62
    Conserved Domains (1) summary
    pfam04724
    Location:42 → 389
    Glyco_transf_17; Glycosyltransferase family 17

  2. XM_015767195.3 → XP_015622681.1  uncharacterized protein LOC4329853 isoform X2

    UniProtKB/TrEMBL
    A3A8L8
    Conserved Domains (1) summary
    pfam04724
    Location:31 → 378
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials