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LOC4329863 mRNA export factor GLE1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329863, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4329863
Gene description
mRNA export factor GLE1
Locus tag
OSNPB_020596100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1568_B05.2-1; OJ1568_B05.2-2; OJ1126_D09.35-1; OJ1126_D09.35-2
Expression
Ubiquitous expression in mature seeds (RPKM 15.0), flower buds (RPKM 7.7) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23614625..23622841, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23132062..23140543, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene high-affinity nitrate transporter-activating protein 2.1 Neighboring gene rhodanese-like domain-containing protein 11, chloroplastic Neighboring gene glycosyl hydrolase 5 family protein Neighboring gene cytochrome P450 86B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol hexakisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore cytoplasmic filaments IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA export factor GLE1
Names
Os02g0596100
protein GLE1
putative GLE1L protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23614625..23622841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767359.3 → XP_015622845.1  mRNA export factor GLE1

    UniProtKB/TrEMBL
    A0A0P0VL78, B7EM97, Q0DZV5
    Conserved Domains (2) summary
    PTZ00121
    Location:100 → 259
    PTZ00121; MAEBL; Provisional
    pfam07817
    Location:351 → 557
    GLE1; GLE1-like protein
Nucleotide Protein
Heading Accession and Version

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