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LOC4329874 B3 domain-containing protein Os02g0598200-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329874, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4329874
Gene description
B3 domain-containing protein Os02g0598200-like
Locus tag
OSNPB_020598200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1212_D02.14
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC4329874 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23737597..23744806, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23255088..23262354, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937975 Neighboring gene uncharacterized LOC136355076 Neighboring gene trans-Golgi network-localized SYP41-interacting protein 1 Neighboring gene uncharacterized LOC4329876 Neighboring gene probable protein phosphatase 2C 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing protein Os02g0598200
Names
LOC_Os02g38470

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401896.1 → NP_001388825.1  B3 domain-containing protein Os02g0598200

    Status: VALIDATED

    Source sequence(s)
    AK064402, AK064548, AK121990, CI077750, CI618425
    UniProtKB/Swiss-Prot
    A0A0N7KFL7, Q6K5K2

  2. NM_001401897.1 → NP_001388826.1  B3 domain-containing protein Os02g0598200

    Status: VALIDATED

    Source sequence(s)
    AK121990, CI077750
    UniProtKB/Swiss-Prot
    A0A0N7KFL7, Q6K5K2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23737597..23744806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6K5K2.1 GenPept UniProtKB/Swiss-Prot:Q6K5K2

Gene LinkOut

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