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LOC4330003 E3 ubiquitin-protein ligase WAV3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330003, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4330003
Gene description
E3 ubiquitin-protein ligase WAV3
Locus tag
OSNPB_020619600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1212_C01.33; OJ1372_D06.16
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Genomic context

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See LOC4330003 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25128228..25133929, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24645514..24651451, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355276 Neighboring gene protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7 Neighboring gene protein MIS12 homolog Neighboring gene uncharacterized LOC4330005

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
E3 ubiquitin-protein ligase WAV3
Names
Os02g0619600
putative zinc finger family protein
zinc finger (C3HC4-type RING finger)-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    25128228..25133929 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767320.3 → XP_015622806.1  E3 ubiquitin-protein ligase WAV3

    UniProtKB/TrEMBL
    B8AFH9, B9F147, Q6K937, Q6K9H1
    Conserved Domains (3) summary
    cd01466
    Location:265 → 436
    vWA_C3HC4_type; VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
    cd16448
    Location:82 → 126
    RING-H2; H2 subclass of RING (RING-H2) finger and its variants
    pfam14624
    Location:611 → 684
    Vwaint; VWA / Hh protein intein-like
Nucleotide Protein
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