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LOC4330059 two-component response regulator ORR11-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330059, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4330059
Gene description
two-component response regulator ORR11-like
Locus tag
OSNPB_020631700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RR11; OsRR11; OsRRA8; OsJ_07618
Expression
Biased expression in flowers (RPKM 7.3), flower buds (RPKM 0.6) and 2 other tissues See more
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Genomic context

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See LOC4330059 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25772937..25774472, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25286623..25287842, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330057 Neighboring gene regulator of nonsense transcripts UPF2 Neighboring gene uncharacterized LOC136355038 Neighboring gene wall-associated receptor kinase-like 22 Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. Hirose N, et al. Plant Cell Physiol, 2007 Mar. PMID 17293362

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator ORR11
Names
A-type response regulator
B1250G12.17
LOC_Os02g42060
putative response regulator
typeA response regulator 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416751.1 → NP_001403680.1  two-component response regulator ORR11

    Status: VALIDATED

    Source sequence(s)
    AB249656, AP014958
    UniProtKB/Swiss-Prot
    A0A0P0VM68, B8AFR8, Q6H468

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    25772937..25774472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6H468.1 GenPept UniProtKB/Swiss-Prot:Q6H468

Gene LinkOut

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Research Materials