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LOC4330225 probable lipid phosphate phosphatase beta [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330225, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4330225
Gene description
probable lipid phosphate phosphatase beta
Locus tag
OSNPB_020661800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4330225 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27283661..27284677)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26797209..26798337)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330223 Neighboring gene uncharacterized LOC107276942 Neighboring gene vesicle-associated protein 1-3 Neighboring gene 14 kDa proline-rich protein DC2.15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable lipid phosphate phosphatase beta
Names
Os02g0661800
Os02g0661900
P0516F12.16
P0516F12.17-1
putative PnFL-1
vesicle-associated membraneprotein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    27283661..27284677
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022764.2 → XP_025878549.1  probable lipid phosphate phosphatase beta

    UniProtKB/TrEMBL
    B8AGC4, B9F1H7, Q6H6M1
    Conserved Domains (1) summary
    cd03391
    Location:33 → 190
    PAP2_containing_2_like; PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a ...
Nucleotide Protein
Heading Accession and Version

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