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LOC4330431 myb family transcription factor PHL11 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330431, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330431
Gene description
myb family transcription factor PHL11
Locus tag
OSNPB_020700300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1111_E07.9
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Genomic context

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See LOC4330431 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29298938..29301994)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28808925..28812011)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g51745 Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene ubiquinol oxidase 1c, mitochondrial-like Neighboring gene polyamine transporter PUT1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor PHL11
Names
Os02g0700300
P0459B01.38
phosphate starvation response regulator-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    29298938..29301994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768271.2 → XP_015623757.1  myb family transcription factor PHL11

    UniProtKB/TrEMBL
    A0A0P0VNC4, Q0DYD6, Q6Z8D2, Q6ZIL3
    Conserved Domains (2) summary
    TIGR01557
    Location:31 → 87
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:129 → 175
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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