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LOC4330467 putative aminoacrylate hydrolase RutD [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330467, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4330467
Gene description
putative aminoacrylate hydrolase RutD
Locus tag
OSNPB_020706900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
49D11.21
Expression
Biased expression in roots before flowering (RPKM 28.1) and flower buds (RPKM 0.9) See more
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Genomic context

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See LOC4330467 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29715401..29717852, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29223864..29226335, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330465 Neighboring gene zinc-finger homeodomain protein 7 Neighboring gene monodehydroascorbate reductase (NADH) Neighboring gene monodehydroascorbate reductase (NADH)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative aminoacrylate hydrolase RutD
Names
OSJNBb0060O16.11
Os02g0706900
P0680A05.37
putative hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416845.1 → NP_001403774.1  putative aminoacrylate hydrolase RutD

    Status: VALIDATED

    Source sequence(s)
    AK059034, CI019672, CI278508, CI771773
    UniProtKB/TrEMBL
    A2X8R7, A3CGY5, Q6Z2F4, Q8S3R0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    29715401..29717852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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