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LOC4330624 membrane protein PM19L-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330624, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330624
Gene description
membrane protein PM19L-like
Locus tag
OSNPB_020731500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 4.6), flowers (RPKM 2.6) and 6 other tissues See more
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Genomic context

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See LOC4330624 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30963620..30964972, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30468750..30470367, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 57-like Neighboring gene uncharacterized LOC9272559 Neighboring gene basic blue protein Neighboring gene protein CURVATURE THYLAKOID 1A, chloroplastic Neighboring gene zinc finger protein CONSTANS-LIKE 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
membrane protein PM19L-like
Names
Os02g0731500
P0617A09.28
putative ABA-induced plasma membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    30963620..30964972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767693.3 → XP_015623179.1  membrane protein PM19L-like

    UniProtKB/TrEMBL
    B8AI16, B9F2J5, Q6Z6W0
    Conserved Domains (1) summary
    pfam05512
    Location:17 → 125
    AWPM-19; AWPM-19-like family
Nucleotide Protein
Heading Accession and Version

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