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LOC4330701 probable serine/threonine-protein kinase SIS8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330701, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4330701
Gene description
probable serine/threonine-protein kinase SIS8
Locus tag
OSNPB_020743500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1734_E02.18-1; OJ1734_E02.18-2
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Genomic context

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See LOC4330701 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31667128..31675233)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31171917..31180177)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937899 Neighboring gene auxin efflux carrier component 1a-like Neighboring gene uncharacterized protein At5g39570 Neighboring gene NEP1-interacting protein-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable serine/threonine-protein kinase SIS8
Names
Os02g0743500
putative MAP kinase kinase kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31667128..31675233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770573.3 → XP_015626059.1  probable serine/threonine-protein kinase SIS8

    UniProtKB/TrEMBL
    A0A0P0VPL0, B8AIF3, Q6Z2V3
    Conserved Domains (2) summary
    cd13999
    Location:844 → 1090
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    pfam14381
    Location:194 → 399
    EDR1; Ethylene-responsive protein kinase Le-CTR1
Nucleotide Protein
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Research Materials