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LOC4330735 transcription termination factor MTERF8, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330735, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4330735
Gene description
transcription termination factor MTERF8, chloroplastic
Locus tag
OSNPB_020749800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0431B06.9
Expression
Biased expression in leaves before flowering (RPKM 17.0), leaves after flowering (RPKM 7.9) and 3 other tissues See more
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Genomic context

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See LOC4330735 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32016317..32020030)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31520988..31523059)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component SEC6 Neighboring gene putative laccase-9 Neighboring gene transcription termination factor MTERF8, chloroplastic Neighboring gene ATP synthase delta chain, chloroplastic Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription termination factor MTERF8, chloroplastic
Names
Os02g0749800
mitochondrial transcription termination factor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    32016317..32020030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770884.3 → XP_015626370.1  transcription termination factor MTERF8, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0VPN1, A2X9M9, A3ABD8, Q6Z8L0
    Conserved Domains (1) summary
    cl19765
    Location:92 → 349
    mTERF
Nucleotide Protein
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