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LOC4330865 uncharacterized LOC4330865 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330865, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4330865
Gene description
uncharacterized LOC4330865
Locus tag
OSNPB_020770600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1353_F08.2-1; OJ1079_F11.33-1
Expression
Ubiquitous expression in leaves after flowering (RPKM 16.1), roots after flowering (RPKM 15.0) and 6 other tissues See more
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Genomic context

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See LOC4330865 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32990579..32994336)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32495223..32499092)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355390 Neighboring gene uncharacterized LOC4330863 Neighboring gene WRKY transcription factor 72B Neighboring gene separase Neighboring gene nitrate reductase [NAD(P)H] Neighboring gene E3 ubiquitin-protein ligase COP1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4330865
Names
Os02g0770600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    32990579..32994336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770660.3 → XP_015626146.1  uncharacterized protein LOC4330865

    UniProtKB/TrEMBL
    A0A0P0VPX1, A2XA23, A3ABS2, Q6ZH51
    Conserved Domains (1) summary
    pfam07800
    Location:48 → 211
    DUF1644; Protein of unknown function (DUF1644)
Nucleotide Protein
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