U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4330905 LRR receptor-like serine/threonine-protein kinase ERECTA [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330905, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4330905
Gene description
LRR receptor-like serine/threonine-protein kinase ERECTA
Locus tag
OSNPB_020777400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ER2; OsER2; RLCK85; OsRLCK85; OJ1534_E09.14
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4330905 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33377751..33385072)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32882405..32889742)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene growth-regulating factor 1-like Neighboring gene uncharacterized LOC4330904 Neighboring gene protein OPAQUE1 Neighboring gene serine/threonine-protein kinase RIPK

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heat acclimation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lRR receptor-like serine/threonine-protein kinase ER2
Names
ER homolog 2
ERECTA homolog 2
ERECTA-like kinase
LOC_Os02g53720
LRR receptor-like serine/threonine-protein kinase ER2
Receptor-like cytoplasmic kinase 85
receptor protein kinase PERK1-like
NP_001403888.1
XP_015623967.1
XP_066163155.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416959.1 → NP_001403888.1  lRR receptor-like serine/threonine-protein kinase ER2 precursor

    Status: VALIDATED

    Source sequence(s)
    AP014958, C22692, CI742890, JN991005
    UniProtKB/Swiss-Prot
    I1Z695, Q0DX34, Q6ZGC7
    UniProtKB/TrEMBL
    B9F3I9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    33377751..33385072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768481.3 → XP_015623967.1  lRR receptor-like serine/threonine-protein kinase ER2 isoform X1

    UniProtKB/TrEMBL
    B9F3I9
    Conserved Domains (2) summary
    PLN00113
    Location:28 → 920
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:262 → 283
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_066307058.1 → XP_066163155.1  lRR receptor-like serine/threonine-protein kinase ER2 isoform X2

    UniProtKB/TrEMBL
    B9F3I9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
I1Z695.2 GenPept UniProtKB/Swiss-Prot:I1Z695

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials