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LOC4330955 putative lipase C4A8.10 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330955, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330955
Gene description
putative lipase C4A8.10
Locus tag
OSNPB_020787100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1316_E06.21
Expression
Ubiquitous expression in roots after flowering (RPKM 18.5), leaves before flowering (RPKM 18.0) and 6 other tissues See more
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Genomic context

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See LOC4330955 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33926056..33929860)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33429954..33433748)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pathogenesis-related protein PRB1-3 Neighboring gene pathogenesis-related protein PRB1-3 Neighboring gene U-box domain-containing protein 52 Neighboring gene mitogen-activated protein kinase kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cellular lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative lipase C4A8.10
Names
OSJNBa0054K20.7
Os02g0787100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    33926056..33929860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771872.3 → XP_015627358.1  putative lipase C4A8.10

    UniProtKB/TrEMBL
    A0A0P0VQJ9, Q6K4Q2
    Conserved Domains (1) summary
    pfam05057
    Location:135 → 360
    DUF676; Putative serine esterase (DUF676)
Nucleotide Protein
Heading Accession and Version

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